DreEX0003575 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4612793-4615479:-
Coord C1 exon
chr4:4615439-4615479
Coord A exon
chr4:4615220-4615344
Coord C2 exon
chr4:4612793-4612818
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTCAATGTGTGTGTGTGTAGGAG
3' ss Score
6.8
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
CTACATCAGCTGATCGCTTTTATCGCATCGACAAGGCTCAG
Seq A exon
GAGCATCTTCACTTTGTAACTGAAATATGCCAGGATGAGGTTTATATCCTGGACCATGAAGCCCCAGCGGTGAGCCAGGTCAGGGCTCCAGGAATGCCTGATGTGGTGGTGGAGCCCAGTTCTGG
Seq C2 exon
TGTCCCTCTGACATCAGATGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(27.8=64.3)
C2:
PF127962=Ank_2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]