RnoEX0037305 @ rn6
Exon Skipping
Gene
ENSRNOG00000020902 | G6pc3
Description
glucose 6 phosphatase catalytic subunit 3 [Source:RGD Symbol;Acc:727875]
Coordinates
chr10:90136856-90137602:+
Coord C1 exon
chr10:90136856-90136946
Coord A exon
chr10:90137133-90137251
Coord C2 exon
chr10:90137461-90137602
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCTCTTCTTTCTAGCCC
3' ss Score
10.38
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCAGCCCCTCTGGTCACTGCATGATCACAGGCGCAGCTTTGTGGCCCGTAATGATAGCCATTTCATCTCAGGTGGCCTCTCAGACCCGCAG
Seq A exon
CCCCTGGGTGAGGGTGATTCCTGGCCTGGCCTACTGCACCTTCCTATTGGCAGTCGGCCTGTCTCGGGTCTTCCTCTTAGCACATTTCCCTCACCAAGTGTTGGCTGGCCTTCTAGCTG
Seq C2 exon
GTGTTATCCTTGGCTGGCTGTTGAGTCCCCGGGTGCCCATGGAGCGGGAACTTAGCTTTTATGGGTTGACTGCTCTGACCCTCATGCTGGGTGCCAGCCTCATGTATTGGACGCTCTTTACACTGGGCCTAGATCTTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020902-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(20.4=100)
A:
PF0156916=PAP2=FE(27.2=100)
C2:
PF0156916=PAP2=PD(10.9=33.3)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTGGTCACTGCATGATC
R:
AGGAAAGATCTAGGCCCAGTGT
Band lengths:
227-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]