HsaEX0026722 @ hg19
Exon Skipping
Gene
ENSG00000141349 | G6PC3
Description
glucose 6 phosphatase, catalytic, 3 [Source:HGNC Symbol;Acc:24861]
Coordinates
chr17:42152048-42152819:+
Coord C1 exon
chr17:42152048-42152138
Coord A exon
chr17:42152337-42152455
Coord C2 exon
chr17:42152678-42152819
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTTGCCTCTCTTCTTTCTAGCCG
3' ss Score
9.85
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCAGCCCTTCTGGACACTGCATGATCACAGGAGCAGCCCTCTGGCCCATAATGACGGCCCTGTCTTCGCAGGTGGCCACTCGGGCCCGCAG
Seq A exon
CCGCTGGGTAAGGGTGATGCCTAGCCTGGCTTATTGCACCTTCCTTTTGGCGGTTGGCTTGTCGCGAATCTTCATCTTAGCACATTTCCCTCACCAGGTGCTGGCTGGCCTAATAACTG
Seq C2 exon
GCGCTGTCCTGGGCTGGCTGATGACTCCCCGAGTGCCTATGGAGCGGGAGCTAAGCTTCTATGGGTTGACTGCACTGGCCCTCATGCTAGGCACCAGCCTCATCTATTGGACCCTCTTTACACTGGGCCTGGATCTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141349_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(18.9=100)
A:
PF0156916=PAP2=FE(25.2=100)
C2:
PF0156916=PAP2=PD(10.1=33.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCTGGACACTGCATGAT
R:
AGAAAGATCCAGGCCCAGTGT
Band lengths:
227-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)