GgaEX1025799 @ galGal4
Exon Skipping
Gene
ENSGALG00000028585 | G6PC3
Description
glucose 6 phosphatase, catalytic, 3 [Source:HGNC Symbol;Acc:HGNC:24861]
Coordinates
JH376251.1:21-628:-
Coord C1 exon
JH376251.1:538-628
Coord A exon
JH376251.1:276-394
Coord C2 exon
JH376251.1:21-174
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACCCAGCTCACCTCTTCCAGCCT
3' ss Score
4.2
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCAGCCCCTCCGGCCACTGCATGATCACCGGGGCAGCACTGTGGCCGCTGGTGACTGCGCTGACAGCGTTGGCATCCCGACACTCCAAGAG
Seq A exon
CCTCGTGCTGAAGCTGATCCCCTTCAGCGCCTACACGCTGCTGCTGCTGGCCGTGGGGCTCTCGCGGGTCTTTGTCCTCGCTCACTTTCCCCACCAGGTGCTCGGTGGCATTGTGGCAG
Seq C2 exon
GGGCCGCCCTGGGCTGGGGGCTGCAGGCTCACATCCCAGCCACGCGCTCTCTGGGTTTCTTCGCTGCCACATCGCTGGGGCTGCTGCTGGGTTCGGTCGCCCTGCATAGGCTCATGGTTGCTGCTGGCGTTGACATCGACTGGTGAGCAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028585_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(20.5=100)
A:
PF0156916=PAP2=FE(27.4=100)
C2:
PF0156916=PAP2=PD(11.0=32.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGGCCACTGCATGATC
R:
CTGCTCACCAGTCGATGTCAA
Band lengths:
234-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]