BtaEX0015184 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016253 | G6PC3
Description
Bos taurus glucose 6 phosphatase, catalytic, 3 (G6PC3), mRNA. [Source:RefSeq mRNA;Acc:NM_183364]
Coordinates
chr19:44534847-44535565:+
Coord C1 exon
chr19:44534847-44534937
Coord A exon
chr19:44535126-44535244
Coord C2 exon
chr19:44535424-44535565
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCTCTTCTTTTTAGCCG
3' ss Score
9.27
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCAGCCCTTCTGGACACTGTATGATCACAGGAGCAGCCCTCTGGCCCATAATGACAGCCGTCTCTTCCCAGATGGCCACTCGGGCCCACAG
Seq A exon
CCGCTGGGTGAGGGTGATTCCTAGCTTGGCTTATTGCACCTTCCTGCTGGCGGTCGGCTTATCTCGGGTCTTCCTCTTAGCACATTTCCCTCACCAGGTGTTGGCTGGCTTAATAACTG
Seq C2 exon
GTGCTGTCCTGGGCTGGCTGATGACCCCTCAGGTGCCCATGGAGCGGGAGCTAAGTTTCTATGGATTGACCTCACTGGCCCTCTTGCTGGGTGCCAGCCTCATCTACTGGACCCTCTTTACACTGGGCCTGGATCTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016253_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(19.0=100)
A:
PF0156916=PAP2=FE(25.3=100)
C2:
PF0156916=PAP2=PD(10.1=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCTTCTGGACACTGTA
R:
AGAAAGATCCAGGCCCAGTGT
Band lengths:
231-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development