BtaINT0064754 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016253 | G6PC3
Description
Bos taurus glucose 6 phosphatase, catalytic, 3 (G6PC3), mRNA. [Source:RefSeq mRNA;Acc:NM_183364]
Coordinates
chr19:44535126-44535565:+
Coord C1 exon
chr19:44535126-44535244
Coord A exon
chr19:44535245-44535423
Coord C2 exon
chr19:44535424-44535565
Length
179 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTGTCACCCTGCTTCCCTAGGTG
3' ss Score
10.91
Exon sequences
Seq C1 exon
CCGCTGGGTGAGGGTGATTCCTAGCTTGGCTTATTGCACCTTCCTGCTGGCGGTCGGCTTATCTCGGGTCTTCCTCTTAGCACATTTCCCTCACCAGGTGTTGGCTGGCTTAATAACTG
Seq A exon
GTGAGCAACTGGGGCAACAGGGTGGACCCAGAGGGTGCCATTGACAGTGGGAGGACCAGTGTATGATTTTCCCATTGTACGGCCAACCCCAAGTCCCCCTTCTGACAAACTACCCTGCTGTTCGGGGTGAGGGTCATAGCCCCAAACTCCTTGAAGCTGCTGTCACCCTGCTTCCCTAG
Seq C2 exon
GTGCTGTCCTGGGCTGGCTGATGACCCCTCAGGTGCCCATGGAGCGGGAGCTAAGTTTCTATGGATTGACCTCACTGGCCCTCTTGCTGGGTGCCAGCCTCATCTACTGGACCCTCTTTACACTGGGCCTGGATCTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016253:ENSBTAT00000021621:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.3=100)
A:
NA
C2:
PF0156916=PAP2=PD(10.1=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAGGGTGATTCCTAGCT
R:
AGAAAGATCCAGGCCCAGTGT
Band lengths:
254-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development