HsaINT0066928 @ hg19
Intron Retention
Gene
ENSG00000141349 | G6PC3
Description
glucose 6 phosphatase, catalytic, 3 [Source:HGNC Symbol;Acc:24861]
Coordinates
chr17:42152337-42152819:+
Coord C1 exon
chr17:42152337-42152455
Coord A exon
chr17:42152456-42152677
Coord C2 exon
chr17:42152678-42152819
Length
222 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TTGTCACTCCACTCTCCTAGGCG
3' ss Score
7.15
Exon sequences
Seq C1 exon
CCGCTGGGTAAGGGTGATGCCTAGCCTGGCTTATTGCACCTTCCTTTTGGCGGTTGGCTTGTCGCGAATCTTCATCTTAGCACATTTCCCTCACCAGGTGCTGGCTGGCCTAATAACTG
Seq A exon
GTGAGCAACTGGGGCAACGGGGTGGACTGAGAGGATGCCTTTGGCAGTGGGAGGATCAGTCTAGGATCTTCCCATCGCTCCCAGCTTCTGTAGAGCCCACCCCAGAGGCCCCCCGTTATGTCTCAGTTTATTCTCTTGCCAAGCTGCACTGCAGCTGGGGGTCGGGGTGGGGAGGGTCATATCCCCAGACTCCTTGAAGCTGTTGTCACTCCACTCTCCTAG
Seq C2 exon
GCGCTGTCCTGGGCTGGCTGATGACTCCCCGAGTGCCTATGGAGCGGGAGCTAAGCTTCTATGGGTTGACTGCACTGGCCCTCATGCTAGGCACCAGCCTCATCTATTGGACCCTCTTTACACTGGGCCTGGATCTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141349-G6PC3:NR_028582:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.2=100)
A:
NA
C2:
PF0156916=PAP2=PD(10.1=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGGTAAGGGTGATGC
R:
CAAGAAAGATCCAGGCCCAGT
Band lengths:
260-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)