DreINT0070774 @ danRer10
Intron Retention
Gene
ENSDARG00000020371 | g6pc3
Description
glucose 6 phosphatase, catalytic, 3 [Source:ZFIN;Acc:ZDB-GENE-061215-19]
Coordinates
chr12:3196624-3196963:+
Coord C1 exon
chr12:3196624-3196742
Coord A exon
chr12:3196743-3196821
Coord C2 exon
chr12:3196822-3196963
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TGTGTGTGTGTTTTCCACAGGTG
3' ss Score
13.76
Exon sequences
Seq C1 exon
TAAGATATTATCCGCAGTGCTGTATCTGCTGTATGCAGTGTTTCTGGGATGTGTAGGCCTTTCTCGGATCTTCATCCTGGCTCATTTTCCTCATCAGGTCGTTGCAGGTTTTCTGACAG
Seq A exon
GTCAGAAGGTAATACATTTAGTCGCTGTCTTCAATAGTAAAGGAGGTGTTGATGGTGTGTGTGTGTGTGTTTTCCACAG
Seq C2 exon
GTGTGCTTCTGGGGGTGTTTCTGAAGCGCTCTGTGCCTGAACGGCGCCCTCTGCTGTTCTTCTTTCGCTTCAGCATGGCTCTGCTCGGTGCTGCTCTTATTTTCCACGCTGTTCTGGAAAAAACGGGGATCGATCTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020371:ENSDART00000010569:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.3=100)
A:
NA
C2:
PF0156916=PAP2=PD(10.1=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGTTTCTGGGATGTGT
R:
GAGCCATGCTGAAGCGAAAGA
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]