RnoINT0063275 @ rn6
Intron Retention
Gene
ENSRNOG00000020902 | G6pc3
Description
glucose 6 phosphatase catalytic subunit 3 [Source:RGD Symbol;Acc:727875]
Coordinates
chr10:90137133-90137602:+
Coord C1 exon
chr10:90137133-90137251
Coord A exon
chr10:90137252-90137460
Coord C2 exon
chr10:90137461-90137602
Length
209 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TTTTTGCCCTGTTCCCTCAGGTG
3' ss Score
11.64
Exon sequences
Seq C1 exon
CCCCTGGGTGAGGGTGATTCCTGGCCTGGCCTACTGCACCTTCCTATTGGCAGTCGGCCTGTCTCGGGTCTTCCTCTTAGCACATTTCCCTCACCAAGTGTTGGCTGGCCTTCTAGCTG
Seq A exon
GTGAGCAACTGGGGCAAAAGGGTGACCCAAGAGGGTGTCTTTGGCAATGGGAGGATCAGTCTAGGAACCTCCCAGCATTCCAAGTTCCTGTAGAGCCAACCCCAGGTCCCCACCTCTGTCTTAGTATGTTCCCCCATGAGATGAATTGCAGCTGAGGGGGGGGTCATTTCCCCAAACATCTTGAAATTGTTTTTGCCCTGTTCCCTCAG
Seq C2 exon
GTGTTATCCTTGGCTGGCTGTTGAGTCCCCGGGTGCCCATGGAGCGGGAACTTAGCTTTTATGGGTTGACTGCTCTGACCCTCATGCTGGGTGCCAGCCTCATGTATTGGACGCTCTTTACACTGGGCCTAGATCTTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020902:ENSRNOT00000028375:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(27.2=100)
A:
NA
C2:
PF0156916=PAP2=PD(10.9=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGTGAGGGTGATTCCT
R:
AGGAAAGATCTAGGCCCAGTGT
Band lengths:
258-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]