MmuINT0066819 @ mm10
Intron Retention
Gene
ENSMUSG00000034793 | G6pc3
Description
glucose 6 phosphatase, catalytic, 3 [Source:MGI Symbol;Acc:MGI:1915651]
Coordinates
chr11:102192749-102193226:+
Coord C1 exon
chr11:102192749-102192867
Coord A exon
chr11:102192868-102193084
Coord C2 exon
chr11:102193085-102193226
Length
217 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTTTTGTCCCGTTCCCTTAGGTG
3' ss Score
12.25
Exon sequences
Seq C1 exon
CCCCTGGGTGAGGGTGATTCCTGGCCTGGCTTATTGTACCTTCCTATTGGCAGTCGGCCTATCTCGGGTCTTCCTCTTAGCACATTTCCCTCACCAAGTGTTGGGCGGCCTTATTGTTG
Seq A exon
GTAAGCAACTGGGGCAAAAGGGTGGCCCAAGAGGGTGTCTTTGGCAATGGGAGGACCAGTCTAGGAACTTCTCAGCAGTCCCAGCGTCTGTAGAGCCAACCTTAAGGTCCCCACTTCTGTCTTAGTTTGTTCTCCTGCTGAGATGAATTGCAGGCGAGGGGGTGGGTCATTTCCCCAAACATCTTGAAACTGATTTTTTTTTGTCCCGTTCCCTTAG
Seq C2 exon
GTGCTGCCCTTGGCTGGCTAATGAGCCCCCGGGTACCCATGGAGCGGGAGCTTAGCTTTTATGGGTTGACTGCTCTGGCCCTCATGCTGGGTGCCAGCCTCATGTATTGGACTCTCTTTACACTGGGCCTAGATCTTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034793:ENSMUST00000070334:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(27.4=100)
A:
NA
C2:
PF0156916=PAP2=PD(11.0=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGTGAGGGTGATTCCT
R:
AGGAAAGATCTAGGCCCAGTGT
Band lengths:
258-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types