RnoEX0039618 @ rn6
Exon Skipping
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60082380-60086740:-
Coord C1 exon
chr3:60086657-60086740
Coord A exon
chr3:60085792-60085820
Coord C2 exon
chr3:60082380-60082464
Length
29 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTTTATTGTACAGCTC
3' ss Score
9.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTGGTCTCTGTCTGTTCTTCTCTTGAGTAAGAAGTATAAGCAGCTTCCTCACATGCTCACAGCTAACCTACTCATCGCTCAG
Seq A exon
CTCCCTGTACAGCACCTATCTATGGACAG
Seq C2 exon
GCCTTCTAGCAGTTTCTTTGTTTCTTTTAAAGAAGCGGGAGAGCGTTCAGATCCCAGTGGGCCTCATCATCATATCTGGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485-'14-12,'14-11,15-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGCTTCCTCACATGCTC
R:
GCCAGATATGATGATGAGGCCC
Band lengths:
125-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]