BtaEX6008970 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22371747-22377201:+
Coord C1 exon
chr2:22371747-22371830
Coord A exon
chr2:22373212-22373329
Coord C2 exon
chr2:22377117-22377201
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTATCATTTTTTTCTTCAGTCT
3' ss Score
8.7
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATCTGGTCTTTGGCTATTCTTCTTTTGAGCAAGAAATATAAACAGCTTCCTCATATGCTTACAACTAATTTACTCATCGCTCAG
Seq A exon
TCTATCGTCTGTGCTGGAATGATGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTCTGGTGTTTGTCTTATTGTACAGCTCCCTCTATAGCACCTACCTGTGGACAG
Seq C2 exon
GCCTTCTAGCAATTTCTTTATTTCTTTTGAAAAAGAGAGAAAGGGTACAAATTCCTGTTGGAATCATCATAATATCTGGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTTGGCTATTCTTCTTTTGAGC
R:
CCCCAGCCAGATATTATGATGA
Band lengths:
165-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]