HsaEX6016794 @ hg19
Exon Skipping
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:22951]
Coordinates
chr2:175326316-175331355:-
Coord C1 exon
chr2:175331272-175331355
Coord A exon
chr2:175330513-175330630
Coord C2 exon
chr2:175326316-175326400
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTAATAATTTTTTCCTTAGTCT
3' ss Score
6.85
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTGGTCTCTGGCTATTCTTCTTTTGAGTAAGAAATATAAACAGCTTCCTCATATGCTTACAACTAATTTACTCATTGCTCAG
Seq A exon
TCTATTGTCTGTGCTGGAATGATGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTTTGGTGTTTGTTCTATTGTACAGCTCCCTCTATAGCACCTACCTGTGGACAG
Seq C2 exon
GCCTTCTAGCAATTTCTTTGTTTCTTTTGAAAAAGCGAGAGAGGGTACAAATTCCTGTTGGAATAATCATAATATCTGGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTCTCTGGCTATTCTTCT
R:
CCCCAGCCAGATATTATGATTATTCC
Band lengths:
168-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)