HsaEX6016794 @ hg38
Exon Skipping
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:174461588-174466627:-
Coord C1 exon
chr2:174466544-174466627
Coord A exon
chr2:174465785-174465813
Coord C2 exon
chr2:174461588-174461672
Length
29 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTCTATTGTACAGCTC
3' ss Score
8.66
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTGGTCTCTGGCTATTCTTCTTTTGAGTAAGAAATATAAACAGCTTCCTCATATGCTTACAACTAATTTACTCATTGCTCAG
Seq A exon
CTCCCTCTATAGCACCTACCTGTGGACAG
Seq C2 exon
GCCTTCTAGCAATTTCTTTGTTTCTTTTGAAAAAGCGAGAGAGGGTACAAATTCCTGTTGGAATAATCATAATATCTGGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328-'15-17,'15-16,16-17
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTCTCTGGCTATTCTTCT
R:
CCCTCTCTCGCTTTTTCAAAAGA
Band lengths:
128-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains