DreEX6034746 @ danRer10
Exon Skipping
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2488795-2492114:+
Coord C1 exon
chr9:2488795-2488878
Coord A exon
chr9:2491018-2491138
Coord C2 exon
chr9:2492033-2492114
Length
121 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTGTGTGTTTGCAGCTA
3' ss Score
9.6
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGTGGAGTCTCACAGTCATGATACTGAGCCGAAAATACCACAGGATTCCTCATATTTTCACCATAAACCTCTTTGTGGCGCAG
Seq A exon
CTATTAGTGTGTGTTGGGATGATCGTGTGGAACTTCGTGGTGAAGCAGGACAGTTTTGTGGCGCAAGTCTTGAGCTTTACTCTGCTGTACGGCTCTCTCTACAGCACCTACATCTGGCCTG
Seq C2 exon
GTCTCATCGTCCTCTCTCTGCTCCTCATGAGAAGTGAAGAGGTGAACTTTAGGCCGGGACTCACTGTGATCACCGGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804-'7-8,'7-6,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGAGTCTCACAGTCATGA
R:
AGCCGGTGATCACAGTGAGTC
Band lengths:
162-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]