RnoEX0042002 @ rn6
Exon Skipping
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31922876-31925955:-
Coord C1 exon
chr20:31925836-31925955
Coord A exon
chr20:31923627-31923722
Coord C2 exon
chr20:31922876-31922975
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGGTGCCTTTCCTCTTTCAGGGA
3' ss Score
11.84
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
CTGTTTGACCACATCGTCTCCTGCATCTCTGACTTCCTGGACTACATGGGGATCAAAGGCCCCCGGATGCCTCTGGGCTTCACCTTCTCATTTCCCTGCCATCAGACGAACCTGGACTGT
Seq A exon
GGAATCTTGATCTCATGGACAAAGGGTTTCAAAGCCACTGACTGTGAGGGCCATGATGTAGCCTCCTTACTGAGGGATGCGGTGAAGAGGAGAGAG
Seq C2 exon
GAATTTGACTTGGATGTGGTGGCTGTGGTCAACGACACCGTGGGCACCATGATGACCTGTGCGTATGAAGAACCCACTTGCGAAATTGGACTCATCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891-'30-32,'30-30,33-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(19.0=100)
A:
PF0034916=Hexokinase_1=FE(15.1=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(11.3=23.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACATCGTCTCCTGCATC
R:
TACGCACAGGTCATCATGGTG
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]