DreEX0037687 @ danRer10
Exon Skipping
Gene
ENSDARG00000101482 | hk2
Description
hexokinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2017]
Coordinates
chr5:13473194-13475843:+
Coord C1 exon
chr5:13473194-13473313
Coord A exon
chr5:13475442-13475537
Coord C2 exon
chr5:13475744-13475843
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTGACATTTTTTTTTAAAGGGT
3' ss Score
7.03
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
TTGTTTGATCACATAGTGCACTGTATCGCTGACTTCTTGGAGTACATGGGGATGAAGGGGGCTTCACTTCCTCTTGGATTTACCTTCTCATTTCCCTGCCATCAGGACAAACTTGACCAG
Seq A exon
GGTATCCTGATAAAGTGGACAAAGGGCTTCAAGGCCTCGGGTTGTGAAGGAGAAGATGTGGCATCCTTGCTGAAAGATGCCATTCATCGCTGTGAG
Seq C2 exon
GAGTTTGATTTGGACGTAGTGGCTGTGGTGAATGACACTGTGGGCACGATGATGACCTGTGGGTACGAGGACCCGCAATGTGAAGTTGGACTTATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101482_MULTIEX1-11/12=10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
PF0034916=Hexokinase_1=FE(15.0=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACATGGGGATGAAGGGGG
R:
AACTTCACATTGCGGGTCCTC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]