MmuEX6005037 @ mm10
Exon Skipping
Gene
ENSMUSG00000000628 | Hk2
Description
hexokinase 2 [Source:MGI Symbol;Acc:MGI:1315197]
Coordinates
chr6:82731048-82734967:-
Coord C1 exon
chr6:82734848-82734967
Coord A exon
chr6:82732101-82732196
Coord C2 exon
chr6:82731048-82731147
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTATTTATTTTCAGAGC
3' ss Score
10.17
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
CTTTTCGACCACATTGTCCAGTGCATCGCGGACTTCCTTGAGTACATGGGCATGAAGGGCGTGTCCCTACCTTTGGGTTTCACCTTCTCCTTCCCTTGCCAGCAGAACAGCCTGGACCAG
Seq A exon
AGCATCCTCCTCAAGTGGACAAAGGGATTCAAGGCATCCGGCTGCGAGGGTGAAGATGTGGTCACCTTGCTGAAGGAAGCCATTCGCCGGCGAGAG
Seq C2 exon
GAGTTTGACCTGGATGTGGTGGCCGTGGTAAATGACACAGTTGGGACTATGATGACTTGTGGCTATGAAGACCCTCACTGTGAAGTTGGCCTCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000628-'34-20,'34-18,37-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
PF0034916=Hexokinase_1=FE(15.0=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACATGGGCATGAAGGGC
R:
GAGGCCAACTTCACAGTGAGG
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types