BtaEX6042953 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9728692-9732593:-
Coord C1 exon
chr11:9732474-9732593
Coord A exon
chr11:9729849-9729944
Coord C2 exon
chr11:9728692-9728791
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCCCATGTGTGATTTTTAGAGC
3' ss Score
8.6
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
CTCTTCGACCACATCGTCCAGTGCATTGCAGACTTCCTGGAGTACATGGGCATGAAGGGTGTGTCCCTGCCTCTAGGTTTCACTTTCTCCTTCCCCTGCCAGCAGAACAGCCTGGACGAG
Seq A exon
AGCATCCTCCTGAAGTGGACTAAAGGCTTCAAGGCGTCTGGCTGCGAGGGTGAGGACGTAGTTATGCTGCTGAAGGAAGCCATCCACCGGCGAGAG
Seq C2 exon
GAGTTTGACCTGGATGTGGTTGCTGTGGTGAACGATACAGTTGGGACTATGATGACCTGTGGCTATGAAGACCCTCACTGTGAAGTCGGCCTCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
PF0034916=Hexokinase_1=FE(15.0=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCATTGCAGACTTCCTGG
R:
AGGGTCTTCATAGCCACAGGT
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]