RnoEX6013985 @ rn6
Exon Skipping
Gene
ENSRNOG00000006116 | Hk2
Description
hexokinase 2 [Source:RGD Symbol;Acc:2797]
Coordinates
chr4:113565500-113568731:-
Coord C1 exon
chr4:113568612-113568731
Coord A exon
chr4:113566615-113566710
Coord C2 exon
chr4:113565500-113565599
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCTATTTTCTTACTTTCAGAGC
3' ss Score
10.94
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CTCTTCGACCACATTGTCCAGTGCATTGCGGACTTCCTGGAGTACATGGGCATGAAGGGCGTGTCCCTGCCTTTGGGTTTCACATTCTCCTTCCCTTGCCAGCAGAACAGCCTAGACCAG
Seq A exon
AGCATCCTCCTCAAGTGGACAAAGGGATTCAAGGCATCTGGCTGCGAGGGTGAGGATGTGGTCACCTTGCTGAAGGAAGCGATTCACCGGCGAGAG
Seq C2 exon
GAGTTTGACCTGGATGTGGTTGCCGTGGTGAATGACACAGTTGGGACTATGATGACTTGTGGCTACGAAGACCCTCACTGTGAAGTTGGCCTTATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006116-'16-19,'16-16,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
PF0034916=Hexokinase_1=FE(15.0=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGGACTTCCTGGAGTACA
R:
TGAGGGTCTTCGTAGCCACAA
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]