BtaEX6105367 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033398 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr28:25779220-25782679:+
Coord C1 exon
chr28:25779220-25779339
Coord A exon
chr28:25782314-25782409
Coord C2 exon
chr28:25782580-25782679
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTTCCTTTCTTTCAGGGA
3' ss Score
13.02
5' ss Seq
AATGTATGA
5' ss Score
2.55
Exon sequences
Seq C1 exon
CTGTTTGACCACATCGTGCAGTGCATCGCCGACTTCCTGGACTACATGGGCCTCAAGGGAGCCCAGCTGCCTTTGGGCTTCACGTTCTCATTTCCCTGCAGGCAGGCGAACATTGACAAG
Seq A exon
GGAACACTCATTGAGTGGACCAAAGGCTTCAAAGCTACTGACTGTGAAGGGGAAGATGTGGTGGATATGCTCAGGGAGGCCATCAAGAGGAGAAAT
Seq C2 exon
GAATTTGACCTGGACATAGTTGCAGTTGTGAATGACACAGTGGGAACCATGATGACCTGTGGCTATGAAGATAGTAATTGTGAGGTTGGCCTGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033398-'15-14,'15-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(19.0=100)
A:
PF0034916=Hexokinase_1=FE(15.1=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0399610=Hema_esterase=PU(12.5=41.2),PF0372711=Hexokinase_2=PU(11.1=23.5)
Main Skipping Isoform:
ENSBTAT00000047474fB3247
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGACCACATCGTGCAGT
R:
GCCACAGGTCATCATGGTTCC
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]