DreEX6061150 @ danRer10
Exon Skipping
Gene
ENSDARG00000038703 | hkdc1
Description
hexokinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9801]
Coordinates
chr13:22890787-22892322:-
Coord C1 exon
chr13:22892203-22892322
Coord A exon
chr13:22891965-22892060
Coord C2 exon
chr13:22890787-22890886
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGCCCATTTGTTCAGGGA
3' ss Score
7.34
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
CTGTTTGACCACATCGTTCAGTGTATCTCAGATTTCTTGGACTATATGGGAATGAAGAACACTCGTCTGCCACTTGGCTTCACCTTCTCTTTCCCGTGCAATCAGACAGGTATTGATAAG
Seq A exon
GGAGATCTGGTCTGCTGGACAAAGGGCTTCAAAGCGACAGACTGTGAAGGGTATGATGTTGTGGACATGCTGAGAGAGGCCATCAAAAGACGAAAT
Seq C2 exon
GAGTTTGATCTCGATATCGTAGCTATAGTTAATGACACAGTTGGCACAATGATGACCTGTGCATATGAGGACCCTAAATGTCAGATTGGTCTTATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038703-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
PF0034916=Hexokinase_1=FE(15.0=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGACCACATCGTTCAGTGT
R:
GCACAGGTCATCATTGTGCCA
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]