MmuEX6048733 @ mm9
Exon Skipping
Gene
ENSMUSG00000020080 | Hkdc1
Description
hexokinase domain containing 1 [Source:MGI Symbol;Acc:MGI:2384910]
Coordinates
chr10:61857903-61861452:-
Coord C1 exon
chr10:61861333-61861452
Coord A exon
chr10:61858146-61858241
Coord C2 exon
chr10:61857903-61858002
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTTCCCCTCCTTTGTTTCAGGGG
3' ss Score
10.96
5' ss Seq
AACGTAGGC
5' ss Score
4.49
Exon sequences
Seq C1 exon
CTCTTTGACCACATCGTACAGTGCATCGCTGACTTCCTGGACTACATGGGCCTCAAGGGCGCCCAGCTGCCTTTGGGCTTCACCTTCTCCTTCCCCTGCAGACAGACATGCATCGACAAG
Seq A exon
GGGACTCTAGTAGGGTGGACCAAAGGCTTCAAGGCCACCGACTGTGAAGGGGAGGACGTGGTGGACATGCTCAGAGAAGCCATCAAGAGGAGAAAC
Seq C2 exon
GAGTTTGACCTGGACATTGTTGCAATCGTGAACGACACAGTGGGGACCATGATGACCTGTGGCTATGAAGATCCCAGGTGTGAGATTGGCTTGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020080-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(19.2=100)
A:
PF0034916=Hexokinase_1=FE(15.3=100)
C2:
PF0034916=Hexokinase_1=PD(11.3=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACATCGTACAGTGCATCG
R:
TCATCATGGTCCCCACTGTGT
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: