GgaEX6047293 @ galGal3
Exon Skipping
Gene
ENSGALG00000009754 | HK2
Description
NA
Coordinates
chrUn_random:10839389-10840042:+
Coord C1 exon
chrUn_random:10839389-10839508
Coord A exon
chrUn_random:10839614-10839709
Coord C2 exon
chrUn_random:10839941-10840042
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTTTTTCCCCTCCAGGGG
3' ss Score
12.56
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCTTCGACCACATCGTCCACTGCATCTCCGACTTCCTGGAGTACATGGGGATGAAGGGAGTGTCGCTCCCGCTGGGCTTCACCTTCTCCTTCCCATGCAAGCAGACCAACCTGGATGAG
Seq A exon
GGGATTCTCCTCAAGTGGACGAAGGGTTTCAAAGCCACGGGCTGCGAAGGGGAGGACGTGGTGAGCCTGCTGAAGGAGGCAATCCACCGCAGAGAG
Seq C2 exon
GAGTTTGACCTGGACGTGGTGGCAGTGGTGAACGACACGGTGGGCACCATGATGACCTGTGGCTACGAAGACCCCTACTGTGAAGTCGGGCTGATAGGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
PF0034916=Hexokinase_1=FE(15.0=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.4=23.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCGTCCACTGCATCTCC
R:
CGTAGCCACAGGTCATCATGG
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]