GgaEX1028753 @ galGal3
Exon Skipping
Gene
ENSGALG00000004222 | F1NEI1_CHICK
Description
NA
Coordinates
chr6:11997741-11999904:+
Coord C1 exon
chr6:11997741-11997860
Coord A exon
chr6:11998823-11998918
Coord C2 exon
chr6:11999805-11999904
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTGCTTTCTTTCTAGGGT
3' ss Score
11.36
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
CTGTTTGACCACATCGTTACCTGCATTTCGGACTTCCTGGATTATATGGGAATAAAAGGTGCACGGCTTCCTCTTGGCTTCACATTCTCCTTCCCTTGCAAGCAGACCAGTCTGGACGCT
Seq A exon
GGTATCCTTCTCAACTGGACAAAAGGTTTCAAAGCTACAGACTGTGAGGGTGAAGACGTGGTGTATTTGCTAAGAGAAGGAATTAAAAGAAGAGAG
Seq C2 exon
GAGTTTGACTTGGATGTGGTAGCTGTAGTGAACGATACGGTGGGCACGATGATGACTTGTGCTTATGAAGACCCAAACTGTGAAATTGGACTCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222-'15-19,'15-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
PF0034916=Hexokinase_1=FE(15.0=100)
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCACATCGTTACCTGCA
R:
ACAAGTCATCATCGTGCCCAC
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]