RnoEX0046073 @ rn6
Exon Skipping
Gene
ENSRNOG00000059005 | Kcnj1
Description
potassium voltage-gated channel subfamily J member 1 [Source:RGD Symbol;Acc:2957]
Coordinates
chr8:33514042-33515528:+
Coord C1 exon
chr8:33514042-33514226
Coord A exon
chr8:33514374-33514537
Coord C2 exon
chr8:33515407-33515528
Length
164 bp
Sequences
Splice sites
3' ss Seq
GACATGTCTTCACTTTACAGAAG
3' ss Score
8.36
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CAATCACACAACTCCACTCGAGTTAGCCATTGAAAGCCAATGCAAGTAAATGTCATTCCAAAGCTTAAGATTCATTAAGGTGGGCCTAAAAGAAGACAGCTGCTGTGCAGACAACGTCGAACAAGCACCACTTGCTTGCTTTGCCCAGCATGGGCGCTTCGGAACGGAGTGTGTTCAGAGTGCTG
Seq A exon
AAGTGCCCTTCACTTTCAAACTGAAGCAAACTTTAGAAGGGCGGAGAAGGGAGGAGGGCAAGGAAAGCTCGGAAGTTGATGCTTTACAAGTCATCTTGAATTGTAATGTGTGGTGGAGATTGTATGGATTCTGTGGATAATGCTGGCCTTAGAATTGCTAATAG
Seq C2 exon
AGCATCAGGGAAGTCATCGTGCATCAGCTTGGAGCCAGGTTGATAGTATGGAATATCAATGACCACCCTCATTCTATGTCAGCTGGGAATCTTGGCAGAACATGGCGGATGAGTAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059005-'3-1,'3-0,4-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000081525fB7193
Main Skipping Isoform:
ENSRNOT00000081525fB7194
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTTAGCCATTGAAAGCCA
R:
CCCAGCTGACATAGAATGAGGG
Band lengths:
255-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]