RnoINT0077838 @ rn6
Intron Retention
Gene
ENSRNOG00000059005 | Kcnj1
Description
potassium voltage-gated channel subfamily J member 1 [Source:RGD Symbol;Acc:2957]
Coordinates
chr8:33514042-33516499:+
Coord C1 exon
chr8:33514042-33514226
Coord A exon
chr8:33514227-33516302
Coord C2 exon
chr8:33516303-33516499
Length
2076 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ACCCTCTAATATGTTTTCAGATC
3' ss Score
9.16
Exon sequences
Seq C1 exon
CAATCACACAACTCCACTCGAGTTAGCCATTGAAAGCCAATGCAAGTAAATGTCATTCCAAAGCTTAAGATTCATTAAGGTGGGCCTAAAAGAAGACAGCTGCTGTGCAGACAACGTCGAACAAGCACCACTTGCTTGCTTTGCCCAGCATGGGCGCTTCGGAACGGAGTGTGTTCAGAGTGCTG
Seq A exon
GTAAGTGTGGATTATCTGAGGAACGCACTATGCGGCCACTGCCTGCTCCTGTTTTACCACTTGCGAGGCCAGGAAGTGAATGTTTTATTTTGCTGACACAGTCGAGGGAAAACCCAAACTTACTGGGGACATGTCTTCACTTTACAGAAGTGCCCTTCACTTTCAAACTGAAGCAAACTTTAGAAGGGCGGAGAAGGGAGGAGGGCAAGGAAAGCTCGGAAGTTGATGCTTTACAAGTCATCTTGAATTGTAATGTGTGGTGGAGATTGTATGGATTCTGTGGATAATGCTGGCCTTAGAATTGCTAATAGGTAAGAAAATCTGTGAGGAAACATGAGCTTCCACATGCCTGGACGGGAGGATCTGTCACCATCGAGTATGGGTCAGGTGCATGTGCAGTGCACAGGAGTAGCTGGAGAAGAAGCCTTTGGCCTCTCTGCCTCACTTGGGACTATCTCCTAGTCTGACTCTTGGAGACTTGCAGTCAGACAGGGATGGATAGAGCCCTGAGTGTGTGCAGGGCTTGTTTGACTCTCTTGGTAACTCTTTCTTCTCCTTATTTTTAGTGCCTGGCCTTTACACTTCAAAACACCACTACGGGCTGTGGTTTTCCTCTCACAGCCTCCACTTGGTGTGACCACTGCCTATGTTTACCTGGGTGAAGGCCAGGAACAAGACACTGAGGGATATCACTTTTGTTTAAAATGTGTCACTAAGCTGGTTTCGCTTCCTAGTTCTTATGAGCAAACACATTTCTGAAGGGGGATTTTGAGATCTATTTTTAAAAATATCTTTGCATTTAATGAAAAAATACCACAAAGGCAGTGCTAACCACAATGGACACACCTTGACTTTTTTGGCAGGGGCGGGGGTGGGTGAAGCAGGGGAAGGTGTATTCTAGGCTTAAGACCCTTGAATTTCACTGTTGTTAGCTGTTTAGGGGAAAGCCCCAATCACTGTTTTGCTGGAAATCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCACACACACACACACCTGTTCTTGATAAGAAACGAGCAGACATTCTTCTGAAGAGGGCTTCATTCTGTTACTATGTGTTAGCTCATGGGTACTGGTGGAGAGAGTGGTAATGGTCTGAACTAGGAAGTGGGGCCTAGGAATGGGGATTAAACATGGTCCTGCCTCCATAGAGCATCAGGGAAGTCATCGTGCATCAGCTTGGAGCCAGGTTGATAGTATGGAATATCAATGACCACCCTCATTCTATGTCAGCTGGGAATCTTGGCAGAACATGGCGGATGAGTAGAAGCAGGTATGTAGATCCTCAGACAGAGCTTCTGAGATCACCCAGTGGGCTGTGAATCCTGTCTTCAAGTGTTCTAGGAAGCACACTTTTAGGGTAGGGTGTTTGACAAATGAGCCCAAGCATGACTAGAGCTGTCCAGAATGAAGGCAGTGAGCTGCTGTCTACTTCCAGCCGTAGGTTGGGTCTCTGTCTTTGGAGAAGTCACCGAAACTTGTTGAGTCTTAGTGCTTTCATTTACAGAAGACGACCTGAACTGGATCAGAATATCCCCAGATATATTGATAGCAGCAAACAAGACAATTTAGGGGATATATTGATACAGTGATATATTGATGAGTTTTCTCTTTCAGTTACTTATTTTTATATATCACAAAATTATGAACAGTCCTCCAGGTTTATGATATTACAAAAATTATTGCATAGCAGCAGGTTAGATTTTAAAACAGAAGTGATTTGCATAATAACATCCAATAAATAAAAGCACAAGGTTCTAATGGGTCCCATTTTTAAGGTCCTGTGGGACAGACTGGTGTCAGGAAATACTTGAGCATAATGTCTGTTAGTAACTTTCCACTTGGTGTCTTTCCCACTTTCTGTGTGACATAGAGGCTACGTATAGTTTATTTTGGCATCCAGAACAGACGAGTTGGTTTATGCGAATGATTAACAAGCCTAATGATTTAGAATTTTTCTCCTCAGAGGTGTATGGGTCTGTATGTGCGTCACCTCCTTTACCACAGCGACAACTATAACCTTACCAACCCTCTAATATGTTTTCAG
Seq C2 exon
ATCAGGGCACTGACAGAAAGGATGTTCAAACACCTCCGAAGATGGTTTGTCACTCACATATTTGGGCGTTCCCGGCAACGGGCAAGGCTGGTCTCTAAAGAAGGAAGATGTAACATCGAGTTTGGCAATGTGGATGCACAGTCAAGGTTTATATTCTTTGTGGACATCTGGACAACTGTGCTGGACCTGAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059005:ENSRNOT00000081525:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0100715=IRK=PU(77.8=53.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]