RnoEX0046074 @ rn6
Exon Skipping
Gene
ENSRNOG00000059005 | Kcnj1
Description
potassium voltage-gated channel subfamily J member 1 [Source:RGD Symbol;Acc:2957]
Coordinates
chr8:33490295-33516499:+
Coord C1 exon
chr8:33490295-33490473
Coord A exon
chr8:33504344-33504465
Coord C2 exon
chr8:33516303-33516499
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCTTTACCCTTCAGGAA
3' ss Score
11.48
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CTGCATATAGATGAGTCAGGAGCCAGTCTAAGCTGACCCACAGACATAAAAACCAAGGCACTGGGCACCTTTAGCTGGGGCATCCAAACTCTTGAATCAAAGGTGCAAGCACCCGACTGCTTTCTTGGGGACCAAGAAAATGAACGTTTGTCTTCACATTTACCCCAGCAATCCATGAG
Seq A exon
GAAGCTCCATGAAGTGCACCCTTGACAGGGGTCGCTGGAGCCCAGAGTGAAAGGCTGTACAGACAATGGTGTCTGAGCTTTCCATTCCTTCTATTCCTACAGGAGTGGCAGGACTCAGTAAG
Seq C2 exon
ATCAGGGCACTGACAGAAAGGATGTTCAAACACCTCCGAAGATGGTTTGTCACTCACATATTTGGGCGTTCCCGGCAACGGGCAAGGCTGGTCTCTAAAGAAGGAAGATGTAACATCGAGTTTGGCAATGTGGATGCACAGTCAAGGTTTATATTCTTTGTGGACATCTGGACAACTGTGCTGGACCTGAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059005_MULTIEX1-2/3=C1-C2
Average complexity
ME(1-2[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.024
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=PU(77.8=53.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTGGGGCATCCAAACTCT
R:
GCATCCACATTGCCAAACTCG
Band lengths:
245-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]