RnoEX0046246 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57470509-57500051:+
Coord C1 exon
chr13:57470509-57470637
Coord A exon
chr13:57474150-57474170
Coord C2 exon
chr13:57499751-57500051
Length
21 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTCCTTTGTGTCAGTCT
3' ss Score
7.33
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATGAAAATTACTGAAGATGACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGCTGTGTTCTTCTACTGGAGATGTTCCCATTGGGATCTACAGAACAGAATCTCAGAAGCTAACTACATCTGAG
Seq A exon
TCTCGAGAAATAGCATCTCAA
Seq C2 exon
TCTCAAATATCCATCAGTGTGGAAGAGTGGGAAGACACCAAAGATGTCAAAGACCCAGGGCACCACCGCAGCATTCACCGCAACTCAACCTCTAGCGACCAGTCAGACCACCCCTTGCTGCGGAGGAAGAGCATGCAGTGGGCCCGGAGGCTGAGCAGAAAAGGGCCAAAGCACTCTGGTAAAACTGCAGAAAAGATAACCCAGCAACGACTGAATCTCTACAGGAGGTCGGAAAGACAGGAGCTTGCTGAACTTGTGAAAAACAGAATGAAACACCTGGGCCTCTCTACGGTGGGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.143 C2=0.626
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000017884fB7227
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGGAGATGTTCCCATTGGG
R:
TGGTGTCTTCCCACTCTTCCA
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]