MmuEX0025174 @ mm9
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:142471306-142480896:+
Coord C1 exon
chr1:142471306-142472047
Coord A exon
chr1:142475032-142475052
Coord C2 exon
chr1:142480596-142480896
Length
21 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTCCTTTGTGTCAGTCT
3' ss Score
7.13
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATATAAACACCTAGAGTACATTTTCAGTAGCTAAAATCTCAACTGTTTCACAAAGTATTGTTAGATAGAAGGCTTTTTAGCACTGTGGATATTGGGTTCCAATCTTTGTTTTTTCCCTAGATCCATGATTAGCCACTTCTAGAACATTCTAAAGAATCAGAACCCTTTAAGTCACCCCGAGATTGTGAGATAAGAAACAAATCTTGTCTGAACCACCTATGTTTCTAATGTATTCCTTGACTATACATATTAGTATTTGGAAGAAAGCAAAACAGGAAATCTCATCAAGCATTGAAATGCATGTTTCTTTGTTTCTACTTTGAAAATGTATGTAAAGCTCTAAGAAAAGTCTAGGGACAGACTTTTTGCCTGATTTTCTAGAAAAAATGGAGTAATTTTATTGGGAGCTAGATCCTATTGATACAGAAGGAAGAATTTTGATGACCACCTACAACTGAGAATACATCTGTGTTTTAACTTTATCACCTCTGTGGTTGCAG
Seq A exon
TCTCGAGAAATAGGATCTCAA
Seq C2 exon
TCTCAAATATCCATTAGTGTGGAAGAGTGGGAAGACACCAAAGATGTCAAAGACCCAGGGCACCACCGCAGCCTTCACCGCAACTCAACGTCTAGTGACCAGTCGGACCATCCCTTGCTGCGGAGGAAGAGCATGCAGTGGGCCCGAAGGCTGAGCAGAAAAGGGCCGAAGCACTCTGGTAAAACTGCAGAAAAAATAACTCAACAGCGACTGAACCTCTACCGGAGATCCGAAAGACAGGAGCTTGCTGAACTTGTGAAAAACAGAATGAAACACCTGGGCCTCTCGACGGTGGGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-'36-32,'36-31,37-32
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.286 C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGACCACCTACAACTGAGA
R:
TGGTGTCTTCCCACTCTTCCA
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: