RnoEX0048137 @ rn6
Exon Skipping
Gene
ENSRNOG00000047637 | LOC100910401
Description
serine protease 55-like [Source:RGD Symbol;Acc:6498506]
Coordinates
chr15:47456994-47459078:+
Coord C1 exon
chr15:47456994-47457085
Coord A exon
chr15:47457809-47458068
Coord C2 exon
chr15:47458936-47459078
Length
260 bp
Sequences
Splice sites
3' ss Seq
CATTTGTATCCATCCCTCAGATT
3' ss Score
8.06
5' ss Seq
ATGGTATGC
5' ss Score
7.14
Exon sequences
Seq C1 exon
TTCTGTGTGGCCACAGACCTGCCTTCCCGAACTCATCGTGGCTGCCGTTGAGGGAGCTGCTTGAAGTCCAGAATGGTGAATTCCCATGGCAA
Seq A exon
ATTAGAACTGGTAGCAGTGAACATCACTGTGGTCCTGGGAATCAAGACTTTCAGCGACATCAACTTGGAGAGAAAACTAGTACAGAAGATCATCACTCACAAAGACTACAAGCCACCCCACCTTGACAGCGACCTTTGCCTGCTCCTCCTTGCCACGCCAATCGAATTCAACAAAGTCAAAATGCCCATCTGCCTGCCACAGAGGGAGAGCACCTGGGACAGGTGCTGGATGGCAGAGTGGGCATACGCCCATGGCCATG
Seq C2 exon
GTTCAGCCAAAGGCTTAAACATGCACCTTAAGAAGCTGAGGGTGGTTCAGATTAGCTGGAGGACATGTGCCAAGAGGGTGACTCAGCTCTCCAGGAACATGCTTTGTGCCTGGAAGGAAGCAGGCACCAACGGCAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047637-'6-8,'6-5,8-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(0.5=14.3)
A:
PF0008921=Trypsin=FE(47.3=100)
C2:
PF0008921=Trypsin=FE(25.5=100),PF108923=DUF2688=PU(85.1=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGCCACAGACCTGC
R:
CACTTGCCGTTGGTGCCT
Band lengths:
228-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]