RnoEX0050643 @ rn6
Exon Skipping
Gene
ENSRNOG00000025053 | Lrp1
Description
LDL receptor related protein 1 [Source:RGD Symbol;Acc:1307535]
Coordinates
chr7:70913899-70918622:-
Coord C1 exon
chr7:70918500-70918622
Coord A exon
chr7:70916401-70916530
Coord C2 exon
chr7:70913899-70914018
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTCCCAGGTCCACAGAGT
3' ss Score
1.3
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
CCCCTAAAACTTGCAGCCCTAAGCAGTTTGCCTGCAGAGACCAAATCACCTGTATCTCGAAGGGCTGGCGGTGTGACGGGGAAAGAGATTGTCCGGACGGCTCTGATGAAGCCCCCGAGATCT
Seq A exon
AGTAAAGCCCAGAGATGCCCACCAAATGAGCACAGTTGCCTGGGGACCGAGCTGTGTGTCCCCATGTCTCGTCTCTGCAACGGGATCCAGGATTGCATGGATGGCTCAGATGAGGGTGCTCACTGCCGAG
Seq C2 exon
AGCTCCGTGTCAACTGTTCTCGAATGGGCTGTCAGCACCATTGCGTCCCTACGCCCAGTGGGCCCACATGCTACTGTAATAACAGCTTCCAGCTTCAGGCAGACGGCAAGACATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025053-'2-3,'2-2,3-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.2)
A:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=WD(100=83.0)
C2:
PF146701=FXa_inhibition=WD(100=87.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTAAAACTTGCAGCCCTA
R:
GTCTTGCCGTCTGCCTGAAG
Band lengths:
235-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]