DreEX0005572 @ danRer10
Exon Skipping
Gene
ENSDARG00000097827 | LRP1 (2 of 2)
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr11:1630547-1674454:+
Coord C1 exon
chr11:1630547-1630762
Coord A exon
chr11:1663011-1663148
Coord C2 exon
chr11:1674335-1674454
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTTTCTCTCTCCCAGGTC
3' ss Score
13.1
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTGTTCAAATGCATTTGCCTTTTTCATTTGAGTAATAGCTGAATGCATTATTAATTTTGACTCATGGCTGGTTCTGCTGTCTCTTTGTTTCAGCTCCAAAAACGTGCAGCCCGAAGCAGTTTGTTTGCAGGGATCAGGTGACGTGCATCTCCAAAGGCTGGCGCTGTGATGGAGAGAAAGACTGTCCGGATGGCTCAGATGAGGCTCCGGATGTCT
Seq A exon
GTCCTCATAACCGTGTGTCTCGATGTCCTCCTAATGAACATCAGTGTCTGGGTTCAGACTTGTGTATTCACATGAGCAAACTGTGTAACGGCGTCCCGGACTGCACTGATGGAGGAGACGAGGGCCCGCACTGCAGAG
Seq C2 exon
AACTGGCGCACAACTGTACTCTCTCCGGCTGTCAGGATGAGTGTGGCGTGACGCGTGGCGGACCCGTCTGCTTCTGCAAGAGCGGATACGAGATCAGCCAAGATGGAAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097827-'0-4,'0-2,3-4
Average complexity
S
Mappability confidence:
86%=67=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126622=cEGF=PU(83.3=48.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTCATGGCTGGTTCTGC
R:
TCTCGTATCCGCTCTTGCAGA
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]