MmuEX0026837 @ mm9
Exon Skipping
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127045002-127049835:-
Coord C1 exon
chr10:127049713-127049835
Coord A exon
chr10:127047399-127047536
Coord C2 exon
chr10:127045002-127045121
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCACTTCTGTTTGCTCCCAGGTC
3' ss Score
11.03
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCCCTAAAACTTGCAGCCCTAAGCAGTTTGCCTGCAGAGACCAAATCACCTGTATCTCAAAGGGCTGGCGGTGTGACGGTGAAAGAGATTGCCCCGACGGCTCTGATGAAGCCCCTGAGATCT
Seq A exon
GTCCACAGAGTAAAGCCCAGAGATGCCCGCCAAATGAGCACAGTTGTCTGGGGACTGAGCTATGTGTCCCCATGTCTCGTCTCTGCAACGGGATCCAGGACTGCATGGATGGCTCAGACGAGGGTGCTCACTGCCGAG
Seq C2 exon
AGCTCCGAGCCAACTGTTCTCGAATGGGTTGTCAACACCATTGTGTACCTACACCCAGTGGGCCCACGTGCTACTGTAACAGCAGCTTCCAGCTGCAGGCAGATGGCAAGACGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.2)
A:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=WD(100=83.0)
C2:
PF146701=FXa_inhibition=WD(100=87.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTAAAACTTGCAGCCCTA
R:
CACGTCTTGCCATCTGCCTG
Band lengths:
238-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: