RnoEX0051360 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21420730-21448218:-
Coord C1 exon
chr6:21448049-21448218
Coord A exon
chr6:21424304-21424383
Coord C2 exon
chr6:21420730-21420897
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTGATACTGATTTTGGACAGTTT
3' ss Score
5.06
5' ss Seq
CCGGTATCT
5' ss Score
4.44
Exon sequences
Seq C1 exon
AGTGGCACCCTTGTCTTCCCAGAATGTGATGATTCGGCATGGCCAGACCCAGGAGTATGTGCTCAAGCCCAAGTACTTCCCAGCCCCAAAGGTGGTCTCTGGAGAGCAGTCCACAGAAGGCTCTTTCTCTTTAAGATATGGGCAGGAGCAAGGCACAGCACCCTTTCAGG
Seq A exon
TTTGGCCAGTCATTATGAAGAATCATTATGAAGAATTAAATGTATTGTGACAAGACCAAAAGGACCCACCGAGAATACCG
Seq C2 exon
TGAGTAACCACACTGGTCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAACTGTCACAACAGCTGCCAGAAGGGGAATACCACCACTCTCATTAGTGAGAACGGCCATGCAGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.374 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000047674fB8152
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGAGAGCAGTCCACAGA
R:
CTTCTGGCAGCTGTTGTGACA
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]