RnoEX0051361 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21378294-21448218:-
Coord C1 exon
chr6:21448049-21448218
Coord A exon
chr6:21420730-21420897
Coord C2 exon
chr6:21378294-21378518
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGCCTCTGCTCCTAGTGA
3' ss Score
9.04
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGTGGCACCCTTGTCTTCCCAGAATGTGATGATTCGGCATGGCCAGACCCAGGAGTATGTGCTCAAGCCCAAGTACTTCCCAGCCCCAAAGGTGGTCTCTGGAGAGCAGTCCACAGAAGGCTCTTTCTCTTTAAGATATGGGCAGGAGCAAGGCACAGCACCCTTTCAGG
Seq A exon
TGAGTAACCACACTGGTCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAACTGTCACAACAGCTGCCAGAAGGGGAATACCACCACTCTCATTAGTGAGAACGGCCATGCAGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
Seq C2 exon
TAATTTGCCATCTTCCATGTATGAATGGTGGCCAGTGCAGTTCAAGGGACAAATGTCAGTGCCCTCCAAATTTCACAGGAAAGCTTTGCCAGATCCCTGTCCTTGGTGCCAGTATGCCTAAACTCTACCAGCACGCCCAGCAGCCAGGCAAGGCACTGGGGAGTCACGTCATCCATTCCACACATACCTTGCCTCTAACCATGACCAACCAGCAAGGGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.374 A=0.105 C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=35.5)
Main Skipping Isoform:
ENSRNOT00000047674fB8152
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGAGAGCAGTCCACAGA
R:
AATGGATGACGTGACTCCCCA
Band lengths:
251-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]