DreEX0044074 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:22988069-23011673:+
Coord C1 exon
chr17:22988069-22988223
Coord A exon
chr17:22999733-22999900
Coord C2 exon
chr17:23011470-23011673
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTGCTGGGCTGCAGTGG
3' ss Score
4.42
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AATACAAAACCCAGTTTCGATGACGATGCACCAGAGTAAGTCCCAAAAGTTTTTGGTCCAGCAGAAAAACTACCACACACACACGCAGATGCAAGGAGTGGGACCCACCTTGAACCGTGCCATCCCGCTGTCAGTGGGCCACAACCCAATTCATG
Seq A exon
TGGGGAACCACACAGGCCGGATCAAGGTGGTCTTCACTCCGACTATCTGCAAGATGACCTGCACCAACGGCCGCTGTCAGAACAGCTGTCAGAAGGGAAACACCACCACTATCATCAGTGAGAACGGACACGCCACCGACACGCTCACCGCCCCCAACTTCAGAGTTG
Seq C2 exon
TTGTTTGCCATTTGCCCTGCATGAATGGTGGAAAATGCAGCGCTCGGGATAAGTGCCAGTGCCCGCCAAACTTTACTGGAAAATTCTGCCAAATGGCGAGTCCAAATGGTCACCAGGGGCAGCATACTGTTGTAAATGGGCAGAAGACACATGTCCACTCAACACACACGTTACCCCTCACTTATGGCACTGGACAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922-'3-6,'3-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=0.211 C2=0.478
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=39.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACCACACACACACGCAG
R:
GTGGACATGTGTCTTCTGCCC
Band lengths:
246-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]