GgaEX1034344 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30585266-30621184:-
Coord C1 exon
chr3:30621003-30621184
Coord A exon
chr3:30605266-30605433
Coord C2 exon
chr3:30585266-30585490
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGCCTCCGCTGACAGTGG
3' ss Score
6.7
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AAACAGGATGATACCACTTTCATCTCAGACACTGATGATGAATCTTCATCATGGCCAAACACAGGAATATGTGATCAAACCCAAGTATTATCCAGTAAAAAAAGTGATTTCAGGAGAGCAATCCACTGAGGGCTCATTACCACTGAGACTCGGCCAAGATCAACTTGCGTCATCTTTTCAAT
Seq A exon
TGGGAAATCACACTGGTCGCATCAAGGTGGTCTTTACACCCAGCATCTGCAAAGTGACTTGTACCAAGGGCAACTGTCAGAACAACTGTGAGAAGGGAAATACCACCACCCTCATCAGTGAGAATGGCCATGCTGCTGACACGCTGACAGCCACTAACTTCCGAGTAG
Seq C2 exon
TTATTTGCCACCTTCCCTGCATGAATGGAGGCCAGTGCAGTTCTAGAGATAAATGCCAGTGCCCTCCTAATTACACCGGCAAACTTTGTCAGATCCCCGTGCAGAATGGCAATACTCCAAAACTGTACCATCACCCACAACAAGTGAATAAGGCTGTAGGATCACAGATTATCCACTCAACTCATACTTTACCACTGACAATGTCTGGACAGCAAGGTGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'10-16,'10-11,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.088 C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATGGCCAAACACAGGA
R:
AGTATTGCCATTCTGCACGGG
Band lengths:
253-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]