BtaEX0020867 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15649324-15728559:+
Coord C1 exon
chr11:15649324-15649493
Coord A exon
chr11:15676636-15676803
Coord C2 exon
chr11:15728335-15728559
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGCCTCCGCTCCTAGTGA
3' ss Score
9.39
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GATGACACCCCTGTCTTCACAGAATGTGATGATACATCATGGCCAGACCCAGGAATACGTGCTCAAGCCCACATACTTCACAGCCCAGAAGGTGGTTTCTGGAGAGCAGTCCACTGAAGGTTCGCTCCCTTTAAGATTCGGGCAGGATCACGTGCCAGCACCTTTTCAGT
Seq A exon
TGAGTAACCACACTGGCCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAGCTGTCAGAACAGCTGTGAGAAGGGGAACACCACCACTCTCATTAGTGAGAATGGTCACGCTGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
Seq C2 exon
TAATTTGCCATCTTCCATGTATGAATGGAGGCCAGTGCAGTTCGAGGGACAAATGCCAGTGCCCTCCAAATTTCACAGGGAAGCTCTGTCAGATCCCAGTCCACGGGGCCAGCCTGCCTAAAGTGTATCAGCATTCCCAGCAGTCAGGCAAGGCGTTGGGAACACATGTTGTCCACTCGACACATACTTTGCCTCTGACCATGACCAGCCAGCAAGGAGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=0.061 C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=35.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTCTGGAGAGCAGTCCA
R:
AACATGTGTTCCCAACGCCTT
Band lengths:
248-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development