RnoEX0051349 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21420730-21540152:-
Coord C1 exon
chr6:21539861-21540152
Coord A exon
chr6:21448049-21448218
Coord C2 exon
chr6:21420730-21420897
Length
170 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGTTTCTTCCCCAGAGT
3' ss Score
10.73
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CAAGCTGTGTTCCACCATGCCAGAATGGAGGGATGTGTCTCCGGCCTCAGTTCTGTGTGTGTAAGCCAGGGACAAAGGGCAAAGCCTGCGAGATCACAGCTGCCCAGGACACCATGTCACCAGTGTTTGGAGGGCAGAACCCTGGCTCCTCGTGGGTCCCTCCTGAGCCAGCAGCAAAGCGTACTTCAACCAAGAAGGCAGACACCTTACCAAGGGTCAGTCCAGTGGCCCAGATGACCTTGACCCTCAAGCCGAAGCCGTCCATGGGACTCTCCCAGCAGATACATTCTCA
Seq A exon
AGTGGCACCCTTGTCTTCCCAGAATGTGATGATTCGGCATGGCCAGACCCAGGAGTATGTGCTCAAGCCCAAGTACTTCCCAGCCCCAAAGGTGGTCTCTGGAGAGCAGTCCACAGAAGGCTCTTTCTCTTTAAGATATGGGCAGGAGCAAGGCACAGCACCCTTTCAGG
Seq C2 exon
TGAGTAACCACACTGGTCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAACTGTCACAACAGCTGCCAGAAGGGGAATACCACCACTCTCATTAGTGAGAACGGCCATGCAGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'4-9,'4-7,6-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.616 A=0.374 C2=0.105
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.5=28.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAAGCGTACTTCAACC
R:
CTGCATGGCCGTTCTCACTAA
Band lengths:
257-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]