RnoEX0051339 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21448049-21598683:-
Coord C1 exon
chr6:21598613-21598683
Coord A exon
chr6:21539861-21540152
Coord C2 exon
chr6:21448049-21448218
Length
292 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTTGTCTTCTGCAGCAA
3' ss Score
11.42
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GATCAATGTCTGTGGAGGGCAGTGCTGCCATGGGTGGAGTAAGGCCCCGGGCTCCCAGAGGTGCACCAAAC
Seq A exon
CAAGCTGTGTTCCACCATGCCAGAATGGAGGGATGTGTCTCCGGCCTCAGTTCTGTGTGTGTAAGCCAGGGACAAAGGGCAAAGCCTGCGAGATCACAGCTGCCCAGGACACCATGTCACCAGTGTTTGGAGGGCAGAACCCTGGCTCCTCGTGGGTCCCTCCTGAGCCAGCAGCAAAGCGTACTTCAACCAAGAAGGCAGACACCTTACCAAGGGTCAGTCCAGTGGCCCAGATGACCTTGACCCTCAAGCCGAAGCCGTCCATGGGACTCTCCCAGCAGATACATTCTCA
Seq C2 exon
AGTGGCACCCTTGTCTTCCCAGAATGTGATGATTCGGCATGGCCAGACCCAGGAGTATGTGCTCAAGCCCAAGTACTTCCCAGCCCCAAAGGTGGTCTCTGGAGAGCAGTCCACAGAAGGCTCTTTCTCTTTAAGATATGGGCAGGAGCAAGGCACAGCACCCTTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'1-7,'1-2,4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.616 C2=0.374
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(9.4=12.0)
A:
PF0000822=EGF=PD(87.5=28.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTCTGTGGAGGGCAGTG
R:
CTGAAAGGGTGCTGTGCCTTG
Band lengths:
237-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]