BtaEX6043431 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15494835-15649493:+
Coord C1 exon
chr11:15494835-15494905
Coord A exon
chr11:15543837-15544134
Coord C2 exon
chr11:15649324-15649493
Length
298 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTTATCTTTCCACAGCAA
3' ss Score
9.68
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGTCAATGTCTGTGGTGGGCAGTGCTGTCATGGCTGGAGTAAGGCCCCTGGCTCCCAGAGGTGCACCAAAC
Seq A exon
CAAGCTGTGTTCCGCCGTGTCAGAATGGAGGGATGTGTCTCCGACCTCAGCTCTGTGTGTGTAAACCAGGGACCAAGGGCAAAGCCTGTGAGACGACAGCTGCCCAGGACACCTCGTCCCCAGTCTTTGGAGGGCAGAGTACTGCGGCCGCTTCCTCCTGGGTCCCTCCTGAGCAAGCCGCAAAGCGCACTTCATCTAAGAAGGCGGACGCGCTACCAAGAGTCAGTCCCGTGGCCCAGATGACCTTGACCCTCAAGCCGAAGCCTTCAGTGGGACTCTCCCAGCAGATCCATTCTCA
Seq C2 exon
GATGACACCCCTGTCTTCACAGAATGTGATGATACATCATGGCCAGACCCAGGAATACGTGCTCAAGCCCACATACTTCACAGCCCAGAAGGTGGTTTCTGGAGAGCAGTCCACTGAAGGTTCGCTCCCTTTAAGATTCGGGCAGGATCACGTGCCAGCACCTTTTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'1-5,'1-1,13-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.670 C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATGTCTGTGGTGGGCAG
R:
ACTGAAAAGGTGCTGGCAC
Band lengths:
240-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]