GgaEX6029775 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30621003-30666663:-
Coord C1 exon
chr3:30666593-30666663
Coord A exon
chr3:30651044-30651332
Coord C2 exon
chr3:30621003-30621184
Length
289 bp
Sequences
Splice sites
3' ss Seq
TTTAAAATGTCTTTCCATAGCTA
3' ss Score
8.19
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGTCAACGTCTGCGGGGGGCAGTGCTGCCACGGCTGGAGCAGGGCCACGGGCTCGCAGAGGTGCATCAAAC
Seq A exon
CTAACTGTGCACCACCGTGCCAAAACGGAGGGATGTGTCTGCGACCTCAGCTCTGTGTGTGTAAGCCAGGAACAAAAGGCAATTCCTGTGAGGATACAGTCATGCAAGACACGTCTTCCACTGGAGGCCGGAGCCCTGTTGTTCCCCCGTGGCCCATCCCCCAGCAGGCTGCCCAGCAGGCCTTCTCCCAGAAGGTGCAGGTCCCACCGAAGGTTGGCCCTATGACTCAGATGGCATTCACCATCAAGCAGAAGCCTCCTGTTGGATTACCTCAGCAAATGCAACCACA
Seq C2 exon
AAACAGGATGATACCACTTTCATCTCAGACACTGATGATGAATCTTCATCATGGCCAAACACAGGAATATGTGATCAAACCCAAGTATTATCCAGTAAAAAAAGTGATTTCAGGAGAGCAATCCACTGAGGGCTCATTACCACTGAGACTCGGCCAAGATCAACTTGCGTCATCTTTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'3-8,'3-3,9-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.670 C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]