GgaEX6029775 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32511055-32556715:-
Coord C1 exon
chr3:32556645-32556715
Coord A exon
chr3:32541096-32541384
Coord C2 exon
chr3:32511055-32511236
Length
289 bp
Sequences
Splice sites
3' ss Seq
TTTAAAATGTCTTTCCATAGCTA
3' ss Score
8.19
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGTCAACGTCTGCGGGGGGCAGTGCTGCCACGGCTGGAGCAGGGCCACGGGCTCGCAGAGGTGCATCAAAC
Seq A exon
CTAACTGTGCACCACCGTGCCAAAACGGAGGGATGTGTCTGCGACCTCAGCTCTGTGTGTGTAAGCCAGGAACAAAAGGCAATTCCTGTGAGGATACAGTCATGCAAGACACGTCTTCCACTGGAGGCCGGAGCCCTGTTGTTCCCCCGTGGCCCATCCCCCAGCAGGCTGCCCAGCAGGCCTTCTCCCAGAAGGTGCAGGTCCCACCGAAGGTTGGCCCTATGACTCAGATGGCATTCACCATCAAGCAGAAGCCTCCTGTTGGATTACCTCAGCAAATGCAACCACA
Seq C2 exon
AAACAGGATGATACCACTTTCATCTCAGACACTGATGATGAATCTTCATCATGGCCAAACACAGGAATATGTGATCAAACCCAAGTATTATCCAGTAAAAAAAGTGATTTCAGGAGAGCAATCCACTGAGGGCTCATTACCACTGAGACTCGGCCAAGATCAACTTGCGTCATCTTTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'1-6,'1-1,2-6=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.670 C2=0.371
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(3.3=4.0)
A:
PF0000822=EGF=PD(93.3=28.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]