DreEX0044068 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:22938281-22988223:+
Coord C1 exon
chr17:22938281-22938351
Coord A exon
chr17:22959341-22959683
Coord C2 exon
chr17:22988069-22988223
Length
343 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCCTTTTGTTACAGCTA
3' ss Score
11.05
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AGTGAACGTCTGTGGGGGGCAGTGCTGTGTTGGTTGGAGCAAGACCCCAGGATCTCAGCGCTGCACTAAAC
Seq A exon
CTAACTGTACACCCCCATGCAAAAATGGAGGGATGTGCTTGGGGCCCCACATGTGTGTGTGTAAGCCAGGCTCTAAAGGCAAGTCCTGTGAACAGACCACTCTCCCTCCATCCTCTCATCCAACTGGACCACTAAATGGACACACCAATGGTGGAGTCCCAAACGGAGGTCATACGAACGGATACTCCAACGGTCATAATGTAATTCCCCAGCGCCCCATTCCTCAGCAGATCTTCCCACAGGGGCAAGGTCAAGTACCATTACCACTGCCCGGCACCAACGTTGGACATTTAACTCTGTCCATGAAGCCGTCAGTTAATGGACCCATTCCATATCAACCACA
Seq C2 exon
AATACAAAACCCAGTTTCGATGACGATGCACCAGAGTAAGTCCCAAAAGTTTTTGGTCCAGCAGAAAAACTACCACACACACACGCAGATGCAAGGAGTGGGACCCACCTTGAACCGTGCCATCCCGCTGTCAGTGGGCCACAACCCAATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.765 C2=0.943
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAACGTCTGTGGGGG
R:
CATGAATTGGGTTGTGGCC
Band lengths:
226-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]