BtaEX6043430 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15543837-15676803:+
Coord C1 exon
chr11:15543837-15544134
Coord A exon
chr11:15649324-15649493
Coord C2 exon
chr11:15676636-15676803
Length
170 bp
Sequences
Splice sites
3' ss Seq
TATCCTTTGTTTCTTTGCAGGAT
3' ss Score
12.62
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
CAAGCTGTGTTCCGCCGTGTCAGAATGGAGGGATGTGTCTCCGACCTCAGCTCTGTGTGTGTAAACCAGGGACCAAGGGCAAAGCCTGTGAGACGACAGCTGCCCAGGACACCTCGTCCCCAGTCTTTGGAGGGCAGAGTACTGCGGCCGCTTCCTCCTGGGTCCCTCCTGAGCAAGCCGCAAAGCGCACTTCATCTAAGAAGGCGGACGCGCTACCAAGAGTCAGTCCCGTGGCCCAGATGACCTTGACCCTCAAGCCGAAGCCTTCAGTGGGACTCTCCCAGCAGATCCATTCTCA
Seq A exon
GATGACACCCCTGTCTTCACAGAATGTGATGATACATCATGGCCAGACCCAGGAATACGTGCTCAAGCCCACATACTTCACAGCCCAGAAGGTGGTTTCTGGAGAGCAGTCCACTGAAGGTTCGCTCCCTTTAAGATTCGGGCAGGATCACGTGCCAGCACCTTTTCAGT
Seq C2 exon
TGAGTAACCACACTGGCCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAGCTGTCAGAACAGCTGTGAGAAGGGGAACACCACCACTCTCATTAGTGAGAATGGTCACGCTGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'13-9,'13-5,21-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.670 A=0.397 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCCTGTGAGACGACAGC
R:
TAAAGACCACCTTGATGCGGC
Band lengths:
255-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]