DreEX0044071 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:22959341-22999900:+
Coord C1 exon
chr17:22959341-22959683
Coord A exon
chr17:22988069-22988223
Coord C2 exon
chr17:22999733-22999900
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTAATGTTTGTATCTTGCAGAAT
3' ss Score
10.43
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CTAACTGTACACCCCCATGCAAAAATGGAGGGATGTGCTTGGGGCCCCACATGTGTGTGTGTAAGCCAGGCTCTAAAGGCAAGTCCTGTGAACAGACCACTCTCCCTCCATCCTCTCATCCAACTGGACCACTAAATGGACACACCAATGGTGGAGTCCCAAACGGAGGTCATACGAACGGATACTCCAACGGTCATAATGTAATTCCCCAGCGCCCCATTCCTCAGCAGATCTTCCCACAGGGGCAAGGTCAAGTACCATTACCACTGCCCGGCACCAACGTTGGACATTTAACTCTGTCCATGAAGCCGTCAGTTAATGGACCCATTCCATATCAACCACA
Seq A exon
AATACAAAACCCAGTTTCGATGACGATGCACCAGAGTAAGTCCCAAAAGTTTTTGGTCCAGCAGAAAAACTACCACACACACACGCAGATGCAAGGAGTGGGACCCACCTTGAACCGTGCCATCCCGCTGTCAGTGGGCCACAACCCAATTCATG
Seq C2 exon
TGGGGAACCACACAGGCCGGATCAAGGTGGTCTTCACTCCGACTATCTGCAAGATGACCTGCACCAACGGCCGCTGTCAGAACAGCTGTCAGAAGGGAAACACCACCACTATCATCAGTGAGAACGGACACGCCACCGACACGCTCACCGCCCCCAACTTCAGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=0.943 C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGTGGAGTCCCAAACGG
R:
AGTCGGAGTGAAGACCACCTT
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]