MmuEX0027236 @ mm9
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75465251-75578544:+
Coord C1 exon
chr17:75465251-75465542
Coord A exon
chr17:75550605-75550774
Coord C2 exon
chr17:75578377-75578544
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTGTTTCTTCCCAGAGT
3' ss Score
10.35
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CCAGCTGTGTTCCGCCATGCCAGAACGGAGGGATGTGTCTACGGCCTCAGCTCTGTGTGTGCAAGCCAGGGTCAAAGGGCAAAGCCTGCGAGATCACAGCTGCCCAGGACACCATGCCGCCAGCCTTTGGAGGGCAGAATCCTGGGTCTTCGTGGGCCCCCCTTGAGCAAGCAGCAAAACATACGTCAACCAAGAAGGCAGACACCTTGCCCAGGGTCAGTCCAGTGGCCCAGATGACCTTGACCCTCAAGCCAAAGCCATCAATGGGACTCTCCCAGCAGATACATCCTCA
Seq A exon
AGTTGCACCCTTATCTTCCCAGAATGTGATGATTCGGCATGGCCAGACCCAGGAGTACCTGCTCAAACCCAAGTACTTCCCAGCCCCGAAGGTGGTCTCTGCGGAGCAATCCACCGAAGGCTCTTTCTCTTTAAGATATGGGCAGGAGCAAGGCACGGCACCCTTTCAGG
Seq C2 exon
TGAGTAACCACACTGGTCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAACTGTCAGAACAGCTGCCAGAAGGGGAATACCACCACTCTCATTAGTGAGAACGGCCATGCAGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'4-8,'4-5,5-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.328 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAATCCTGGGTCTTCGTG
R:
GTTCTGACAGTTGCCCTTGGT
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: