MmuEX0027236 @ mm10
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75065911-75179204:+
Coord C1 exon
chr17:75065911-75066202
Coord A exon
chr17:75151265-75151434
Coord C2 exon
chr17:75179037-75179204
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTGTTTCTTCCCAGAGT
3' ss Score
10.35
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CCAGCTGTGTTCCGCCATGCCAGAACGGAGGGATGTGTCTACGGCCTCAGCTCTGTGTGTGCAAGCCAGGGTCAAAGGGCAAAGCCTGCGAGATCACAGCTGCCCAGGACACCATGCCGCCAGCCTTTGGAGGGCAGAATCCTGGGTCTTCGTGGGCCCCCCTTGAGCAAGCAGCAAAACATACGTCAACCAAGAAGGCAGACACCTTGCCCAGGGTCAGTCCAGTGGCCCAGATGACCTTGACCCTCAAGCCAAAGCCATCAATGGGACTCTCCCAGCAGATACATCCTCA
Seq A exon
AGTTGCACCCTTATCTTCCCAGAATGTGATGATTCGGCATGGCCAGACCCAGGAGTACCTGCTCAAACCCAAGTACTTCCCAGCCCCGAAGGTGGTCTCTGCGGAGCAATCCACCGAAGGCTCTTTCTCTTTAAGATATGGGCAGGAGCAAGGCACGGCACCCTTTCAGG
Seq C2 exon
TGAGTAACCACACTGGTCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAACTGTCAGAACAGCTGCCAGAAGGGGAATACCACCACTCTCATTAGTGAGAACGGCCATGCAGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=0.311 C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAATCCTGGGTCTTCGTG
R:
GTTCTGACAGTTGCCCTTGGT
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types