RnoEX6027671 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21376558-21420897:-
Coord C1 exon
chr6:21420730-21420897
Coord A exon
chr6:21378294-21378518
Coord C2 exon
chr6:21376558-21376832
Length
225 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTTTTCCTTTTCAGTAA
3' ss Score
11.51
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TGAGTAACCACACTGGTCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAACTGTCACAACAGCTGCCAGAAGGGGAATACCACCACTCTCATTAGTGAGAACGGCCATGCAGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
Seq A exon
TAATTTGCCATCTTCCATGTATGAATGGTGGCCAGTGCAGTTCAAGGGACAAATGTCAGTGCCCTCCAAATTTCACAGGAAAGCTTTGCCAGATCCCTGTCCTTGGTGCCAGTATGCCTAAACTCTACCAGCACGCCCAGCAGCCAGGCAAGGCACTGGGGAGTCACGTCATCCATTCCACACATACCTTGCCTCTAACCATGACCAACCAGCAAGGGGTCAAAG
Seq C2 exon
TGAAATTTCCCCCCAACATAGTCAATATCCATGTGAAGCATCCTCCTGAGGCTTCTGTGCAGATACACCAGGTTTCCAGAATTGATGGCCCAGTGGGCCAGAGGGTGAAAGAAGTGCAACCGGGCCAGTCCCAAGTCTCTTACCAAGGGCTGCCCGTCCAGAAGACCCAGACAGTCCATTCCACATACTCCCACCAGCAGGTCATTCCGCATGTGTATCCCGTGGCTGCTAAGACACAACTTGGACGATGCTTCCAGGAAACCATTGGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'3-16,'3-10,14-16=AN
Average complexity
A_C3
Mappability confidence:
96%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.158 C2=0.228
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=35.5)
C2:
PF0068312=TB=PU(2.3=1.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAACAAGCGCAAGGCCCTG
R:
GCACACAACTTGAAAAGGTAGGG
Band lengths:
212-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]